First you'll need to configure the program so do the followingl
Select "EAC" from the pull-down menu"
Then choose "Drive Options"
Click the tab at the top left that says "Extraction Method"
Click on "Detect Read Features"
Now click on the tab called "Drive"
Click on "Autodetect Read Command Now"
Now click OK
You can choose to create a cue file seperately or when you rip a cd.
If you want to rip a mix cd as one single file with a cue file do the following;
Select "Action" from the pull-down menu
Then "Copy image and create CUE sheet"
Then choose uncompressed or compressed as required (I do uncompressed then use RazorLame to encode it)
If you want to just create a cue sheet on it's own do this;
Select "Action" from the pull-down menu
Then "Create CUE Sheet"
Then select "Single wav file"